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An assessment of air as a source of DNA contamination encountered when performing PCR.
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Widespread estrogen-dependent repression of micrornas involved in breast tumor cell growth.
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Inhibition of aurora kinases for tailored risk-adapted treatment of multiple myeloma.
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The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.
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Importin 8 is a gene silencing factor that targets argonaute proteins to distinct mRNAs.
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Aging and replicative senescence have related effects on human stem and progenitor cells.
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MicroRNA signatures predict oestrogen receptor, progesterone receptor and HER2/neu receptor status in breast cancer.
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RNA degradation compromises the reliability of microRNA expression profiling.
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Transcriptome complexity in a genome-reduced bacterium.
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Cyclical DNA methylation of a transcriptionally active promoter.
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Transient cyclical methylation of promoter DNA.
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Hfe acts in hepatocytes to prevent hemochromatosis.
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Diverse roles of hnRNP L in mammalian mRNA processing: a combined microarray and RNAi analysis.
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RNA. 2008 Feb;14(2):284-96. Epub 2007 Dec 11.
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Transcriptome profiling of estrogen-regulated genes in human primary osteoblasts reveals an osteoblast-specific regulation of the insulin-like growth factor binding protein 4 gene.
Denger, S., Bahr-Ivacevic, T., Brand, H., Reid, G., Blake, J., Seifert, M., Lin, C.Y., May, K., Benes, V., Liu, E.T. & Gannon, F.
Mol Endocrinol. 2008 Feb;22(2):361-79. Epub 2007 Oct 25.
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Replicative senescence of mesenchymal stem cells: a continuous and organized process.
Wagner, W., Horn, P., Castoldi, M., Diehlmann, A., Bork, S., Saffrich, R., Benes, V., Blake, J., Pfister, S., Eckstein, V. & Ho, A.D.
PLoS ONE. 2008 May 21;3(5):e2213.
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miChip: an array-based method for microRNA expression profiling using locked nucleic acid capture probes.
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Lack of haptoglobin affects iron transport across duodenum by modulating ferroportin expression.
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miChip: a microarray platform for expression profiling of microRNAs based on locked nucleic acid (LNA) oligonucleotide capture probes.
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Methods. 2007 Oct;43(2):146-52.
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Life cycle transcriptome of the malaria mosquito Anopheles gambiae and comparison with the fruitfly Drosophila melanogaster.
Koutsos, A.C., Blass, C., Meister, S., Schmidt, S., MacCallum, R.M., Soares, M.B., Collins, F.H., Benes, V., Zdobnov, E., Kafatos, F.C. & Christophides, G.K.
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Pax-Six-Eya-Dach network during amphioxus development: conservation in vitro but context specificity in vivo.
Kozmik, Z., Holland, N.D., Kreslova, J., Oliveri, D., Schubert, M., Jonasova, K., Holland, L.Z., Pestarino, M., Benes, V. & Candiani, S.
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Physiologic systemic iron metabolism in mice deficient for duodenal Hfe.
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Modular Proteins from the Drosophila sallimus (sls) Gene and their Expression in Muscles with Different Extensibility.
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STAT3 mediates hepatic hepcidin expression and its inflammatory stimulation.
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Iron regulation and the cell cycle: identification of an iron-responsive element in the 3'-untranslated region of human cell division cycle 14A mRNA by a refined microarray-based screening strategy.
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A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA).
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RNA. 2006 May;12(5):913-20. Epub 2006 Mar 15.
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The molecular elasticity of the insect flight muscle proteins projectin and kettin.
Bullard, B., Garcia, T., Benes, V., Leake, M.C., Linke, W.A. & Oberhauser, A.F.
Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4451-6. Epub 2006 Mar 14.
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Adhesion of hematopoietic progenitor cells to hurnan mesenchymal stromal cells as a model for interaction between stem cells and their niche.
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Blood November 2006 108(11)

Proteomic analysis of nasal aspirates derived from children suffering influenza virus infection.
Teran, LM; Ruggeberg, S; Hernandez, JL; Fuentes-Arenas, F; Franz, T
Molecular & Cellular Proteomics October 2006 5(10)

Targeted disruption of the mouse mitoferrin (Slc25A37) mitochondrial solute carrier results in defective primitive and definitive erythropoiesis.
Paw, Barry H.; Gwynn, Babette; Langer, Nathaniel B.; Shaw, George C.; Lambert, Amy J.; Boyer, Leah A.; Li, Liangtao; Stolte, Jens; Robledo, Raymond F.; Sahr, Kenneth E.; Schlaeger, Thorsten M.; Hentze, Matthias W.; Muckenthaler, Martina U.; Kaplan, Jerry; Peters, Luanne L.
Blood November 2006 108(11)

Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii.
Raible, F., Tessmar-Raible, K., Osoegawa, K., Wincker, P., Jubin, C., Balavoine, G., Ferrier, D., Benes, V., de Jong, P., Weissenbach, J., Bork, P. & Arendt, D.
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PubMed

Multiple mechanisms induce transcriptional silencing of a subset of genes, including oestrogen receptor alpha, in response to deacetylase inhibition by valproic acid and trichostatin A.
Reid, G., Metivier, R., Lin, C.Y., Denger, S., Ibberson, D., Ivacevic, T., Brand, H., Benes, V., Liu, E.T. & Gannon, F.
Oncogene 2005 Jul 21;24(31):4894-907.
PubMed

Quantitative real-time RT-PCR – a perspective.
Bustin, S.A., Benes, V., Nolan, T. & Pfaffl, M.W.
J Mol Endocrinol 2005 Jun;34(3):597-601.
PubMed

Alternative splicing microarrays reveal functional expression of neuron-specific regulators in Hodgkin lymphoma cells.
Relogio, A., Ben-Dov, C., Baum, M., Ruggiu, M., Gemund, C., Benes, V., Darnell, R.B. & Valcarcel, J.
J Biol Chem 2005 Feb 11;280(6):4779-84. Epub 2004 Nov 16.
PubMed

Transcriptional complexes engaged by apo-estrogen receptor-alpha isoforms have divergent outcomes.
Metivier, R., Penot, G., Carmouche, R.P., Hubner, M.R., Reid, G., Denger, S., Manu, D., Brand, H., Kos, M., Benes, V. & Gannon, F.
EMBO J 2004 Sep 15;23(18):3653-66. Epub 2004 Sep 02.
PubMed

Characterization of an Escherichia coli elaC deletion mutant.
Schilling, O., Ruggeberg, S., Vogel, A., Rittner, N., Weichert, S., Schmidt, S., Doig, S., Franz, T., Benes, V., Andrews, S.C., Baum, M. & Meyer-Klaucke, W.
Biochem Biophys Res Commun 2004 Aug 6;320(4):1365-73.
PubMed

Targeted mutagenesis of the murine IRP1 and IRP2 genes reveals context-dependent RNA processing differences in vivo.
Galy, B., Ferring, D., Benesova, M., Benes, V. & Hentze, M.W.
RNA 2004 Jul;10(7):1019-25.
PubMed

An Hfe-dependent pathway mediates hyposideremia in response to lipopolysaccharide-induced inflammation in mice.
Roy, C.N., Custodio, A.O., de Graaf, J., Schneider, S., Akpan, I., Montross, L.K., Sanchez, M., Gaudino, A., Hentze, M.W., Andrews, N.C. & Muckenthaler, M.U.
Nat Genet 2004 May;36(5):481-5. Epub 2004 Apr 18.
PubMed

ET recombination: DNA engineering using homologous recombination in E. coli.
Muyrers, J.P., Zhang, Y., Benes, V., Testa, G., Rientjes, J.M. & Stewart, A.F.
Methods Mol Biol 2004;256:107-21.
PubMed

Regulatory defects in liver and intestine implicate abnormal hepcidin and Cybrd1 expression in mouse hemochromatosis.
Muckenthaler, M., Roy, C.N., Custodio, A.O., Minana, B., deGraaf, J., Montross, L.K., Andrews, N.C. & Hentze, M.W.
Nat Genet 2003 May;34(1):102-7.
PubMed

Standardization of protocols in cDNA microarray analysis.
Benes, V. & Muckenthaler, M.
Trends Biochem Sci 2003 May;28(5):244-9.
PubMed

Engineering the mouse genome with bacterial artificial chromosomes to create multipurpose alleles.
Testa, G., Zhang, Y., Vintersten, K., Benes, V., Pijnappel, W.W., Chambers, I., Smith, A.J., Smith, A.G. & Stewart, A.F.
Nat Biotechnol 2003 Apr;21(4):443-7.
PubMed

Cloning and developmental expression of amphioxus Dachschund.
Candiani, S., Kreslova, J., Benes, V., Oliveri, D., Castagnola, P., Pestarino, M. & Kozmik, Z.
Gene Expr Patterns 2003 Mar;3(1):65-9.
PubMed

Automatisierte DNA-Extraktion durch Kombination von Liquid Handling und
Zentrifugation
Zimmermann, J., Zinn, T., Benes, V., Ibberson, D., Boulin, C., Griebel, R., Lomax, P., Mausel, M., Schubell, U. & Gunther-Eberle, K.
Laborwelt 2003 4(5) 41-42

Small is beautiful: Flexible Automatisierunginsel in der genomischen Forschung.
Zimmermann, J., Schmidt, S., Benes, V., Boulin, C., Griebel, R., Lomax, P., Zinn, T., Mausel, M., Schubell, U. & Gunther-Eberle, K.
Biospektrum 2003 9 764-766

The genome sequence of the malaria mosquito Anopheles gambiae.
Holt, R.A., Subramanian, G.M., Halpern, A., Sutton, G.G., Charlab, R., Nusskern, D.R., Wincker, P., Clark, A.G., Ribeiro, J.M., Wides, R., Salzberg, S.L., Loftus, B., Yandell, M., Majoros, W.H., Rusch, D.B., Lai, Z., Kraft, C.L., Abril, J.F., Anthouard, V., Arensburger, P., Atkinson, P.W., Baden, H., de Berardinis, V., Baldwin, D., Benes, V., Biedler, J., Blass, C., Bolanos, R., Boscus, D., Barnstead, M., Cai, S., Center, A., Chatuverdi, K., Christophides, G.K., Chrystal, M.A., Clamp, M., Cravchik, A., Curwen, V., Dana, A., Delcher, A., Dew, I., Evans, C.A., Flanigan, M., Grundschober-Freimoser, A., Friedli, L., Gu, Z., Guan, P., Guigo, R., Hillenmeyer, M.E., Hladun, S.L., Hogan, J.R., Hong, Y.S., Hoover, J., Jaillon, O., Ke, Z., Kodira, C., Kokoza, E., Koutsos, A., Letunic, I., Levitsky, A., Liang, Y., Lin, J.J., Lobo, N.F., Lopez, J.R., Malek, J.A., McIntosh, T.C., Meister, S., Miller, J., Mobarry, C., Mongin, E., Murphy, S.D., O'Brochta, D.A., Pfannkoch, C., Qi, R., Regier, M.A., Remington, K., Shao, H., Sharakhova, M.V., Sitter, C.D., Shetty, J., Smith, T.J., Strong, R., Sun, J., Thomasova, D., Ton, L.Q., Topalis, P., Tu, Z., Unger, M.F., Walenz, B., Wang, A., Wang, J., Wang, M., Wang, X., Woodford, K.J., Wortman, J.R., Wu, M., Yao, A., Zdobnov, E.M., Zhang, H., Zhao, Q., Zhao, S., Zhu, S.C., Zhimulev, I., Coluzzi, M., della Torre, A., Roth, C.W., Louis, C., Kalush, F., Mural, R.J., Myers, E.W., Adams, M.D., Smith, H.O., Broder, S., Gardner, M.J., Fraser, C.M., Birney, E., Bork, P., Brey, P.T., Venter, J.C., Weissenbach, J., Kafatos, F.C., Collins, F.H. & Hoffman, S.L.
Science 2002 Oct 4;298(5591):129-49.
PubMed

A genomic switch at the transition from cell proliferation to terminal differentiation in the Drosophila eye.
Jasper, H., Benes, V., Atzberger, A., Sauer, S., Ansorge, W. & Bohmann, D.
Dev Cell 2002 Oct;3(4):511-21.
PubMed

Functional equivalency of amphioxus and vertebrate Pax258 transcription factors suggests that the activation of mid-hindbrain specific genes in vertebrates occurs via the recruitment of Pax regulatory elements.
Krelova, J., Holland, L.Z., Schubert, M., Burgtorf, C., Benes, V. & Kozmik, Z.
Gene 2002 Jan 9;282(1-2):143-50.
PubMed

An estimate of large-scale sequencing accuracy.
Hill, F., Gemund, C., Benes, V., Ansorge, W. & Gibson, T.J.
EMBO Rep. 2000 Jul;1(1):29-31.
PubMed